PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010397.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family E2F/DP
Protein Properties Length: 288aa    MW: 32450.1 Da    PI: 9.3642
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010397.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.88e-2834116271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aco010397.1  34 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpngklaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 116
                  689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.3E-1235287IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.8E-4630121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-3533116IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-2535116IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-2136117IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.14E-44121224IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.62E-44122257No hitNo description
SMARTSM011388.2E-76123285IPR014889Transcription factor DP, C-terminal
PfamPF087812.6E-45124258IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAMTRPRRRR QLVMCLISGK KKKRGARVTA GDKSGRGLRQ FSMKVCEKVE SKGRTTYNEV  60
ADELVAEFAD PNGKLASPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT  120
SLNDIEELKA ERMALKNRIE KKTAYLQELQ DQFIGLQNLV QRNEHLYGSG NIPSGGVALP  180
FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV LKAMRFCERG QKEGSCEPSS  240
NGGECSSTPN THQHHMPQPT GPDTMAKPPI NSPPIPGILK GRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-4027121193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723RRRQLVMCLISGKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388689.11e-165PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-134DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM0RVV11e-161M0RVV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00430_0011e-160(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP